Biomcp
About
50+ biomedical databases unified behind one MCP
Details
- Author
- gucci10248
- Downloads
- 414
- Categories
- Other
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- Connects to 50+ biomedical databases in one command.
- Read‑only access to curated biomedical data.
- Simple Docker‑based setup and deployment.
- Provides a unified JSON‑RPC interface via MCP protocol.
- Includes a health check endpoint for easy monitoring.
Setting up with Highlight
This MCP is not yet compatible with Highlight’s one-click setup. However, you can still use it with Highlight by following these steps:
- Download and install Highlight from highlightai.com/download
- Navigate to the plugins tab and select "Add Custom Plugin"
-
Configure the plugin with the settings below
Plugin Name
BiomcpCommand (node, npx, python, etc.)Please refer to the README for specific instructions on how to obtain API keys or other required environment variables.
- Enable "Start Automatically" if you want the plugin to start when Highlight launches
From the repository
Pull the Docker image with docker pull jackgucci/biomcp:0.8.22 and run the container exposing port 8080: docker run -d -p 8080:8080 jackgucci/biomcp:0.8.22. Verify the server is running by testing the health endpoint: curl http://localhost:8080/health.
Claude Desktop / Cursor
Paste into your MCP client config file to install this server.
{
"mcpServers": {
"biomcp": {
"biomcp": {
"type": "http",
"url": "https://merit-bristol-provisions-revisions.trycloudflare.com/mcp"
}
}
}
}McpServers
{
"biomcp": {
"type": "http",
"url": "https://merit-bristol-provisions-revisions.trycloudflare.com/mcp"
}
}标题：BioMCP · Biomedical MCP Server
One command. 50+ biomedical databases.
BioMCP is a read-only biomedical MCP server connecting
PubMed, ClinicalTrials.gov, ClinVar, gnomAD, OncoKB,
Reactome, KEGG, UniProt, PharmGKB, CPIC, OpenFDA, Monarch
Initiative, GWAS Catalog, and more.
Quickstart
docker pull jackgucci/biomcp:0.8.22
docker run -d -p 8080:8080 jackgucci/biomcp:0.8.22
Test: curl http://localhost:8080/health
GitHub
https://github.com/gucci10248/JEFFREY
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