Scientific Computation MCP

by aman-amith-shastry

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About

Provides tools for scientific computation, including tensor storage, linear algebra, vector calculus, and visualization.

Details

Author
aman-amith-shastry
Categories
Developer Tools, Project Management, Automation, Other, File Management

Setup

Install Scientific Computation MCP in your MCP client (Claude Desktop, Cursor, Windsurf, and others).

Repository: https://github.com/aman-amith-shastry/scientific_computation_mcp

Follow the installation instructions in the repository README, then restart your MCP client.

The server speaks streamable HTTP. Add it from Smithery with the Smithery CLI (Node 20+):

npm install -g smithery@latest smithery mcp add @aman-amith-shastry/scientific_computation_mcp --client claude

The namespace is lowercase. Smithery's registry lookup is case-sensitive, and the mixed-case spelling resolves to an empty record with no tools rather than failing outright, so a capitalized name looks like a server with no capabilities.

Swap--client cursorfor Cursor, or drop--clientto add it as a remote Smithery connection. Restart the client afterwards so it picks up the server.

The MCP endpoint is athttp://localhost:8081/mcpand a liveness probe athttp://localhost:8081/health. Environment overrides:PORT,HOST,MCP_PATH,ALLOWED_ORIGINS,LOG_LEVEL.

Smithery no longer builds or hosts containers — servers are published either as a URL that Smithery's gateway proxies to, or as an MCPB bundle for local stdio. This server is published by URL, so the container runs on any host that can serve HTTPS.

docker build -t scientific-computation-mcp . docker run -p 8081:8081 -e PORT=8081 scientific-computation-mcp

- One instance.Tensors live in process memory between tool calls, so scaling past a single replica splits the store and breakscreate_tensorview_tensorflows.
- Sessions must survive.The transport runs stateful (stateless_http=False) and the tensor store is keyed per MCP session, which is what keeps concurrent users from reading each other's tensors.

render.yamldeploys the Dockerfile as a single free-plan web service. In the Render dashboard:New → Blueprint, then select this repo. Render injectsPORT, terminates TLS, and probes/health; no other configuration is required.

Free instances spin down after 15 minutes withoutinboundtraffic and take roughly a minute to come back. An open MCP session does not prevent this: the streamable-HTTP stream is server-to-client, so an idle session sends nothing inbound and the service sleeps out from under it. Two consequences worth planning around:

- Tensors do not survive a 15-minute gap between tool calls.The store is in process memory, so a spin-down takes the session and its tensors together. Active use keeps the service up, since each tool call is inbound traffic; a long pause mid-analysis does not.
- Publish-time scans can land on a sleeping instance.Smithery scans the URL asSmitheryBot/1.0, and a cold start can outrun its timeout. Warm/healthfirst.

The free tier also grants 750 instance-hours per workspace per month against a ~730-hour month, so one continuously running free service just fits and a second does not.

Any host that keeps one process always on avoids all of this — the container is plain HTTP on$PORTwith no platform-specific assumptions.

curl -sS -o /dev/null -w '%{http_code}\n' https://<your-host>/health smithery mcp publish "https://<your-host>/mcp" -n @aman-amith-shastry/scientific_computation_mcp

The server takes no user configuration, so no config schema is needed.

- create_tensor: Creates a new tensor based on a given name, shape, and values, and adds it to the tensor store. For the purposes of this server, tensors are vectors and matrices.
- view_tensor: Display the contents of a tensor from the store .
- delete_tensor: Deletes a tensor based on its name in the tensor store.

- add_matrices: Adds two matrices with the provided names, if compatible.
- subtract_matrices: Subtracts two matrices with the provided names, if compatible.
- multiply_matrices: Multiplies two matrices with the provided names, if compatible.
- scale_matrix: Scales a matrix of the provided name by a certain factor, in-place by default.
- matrix_inverse: Computes the inverse of the matrix with the provided name.
- transpose: Computes the transpose of the inverse of the matrix of the provided name.
- determinant: Computes the determinant of the matrix of the provided name.
- rank: Computes the rank (number of pivots) of the matrix of the provided name.
- compute_eigen: Calculates the eigenvectors and eigenvalues of the matrix of the provided name.
- qr_decompose: Computes the QR factorization of the matrix of the provided name. The columns of Q are an orthonormal basis for the image of the matrix, and R is upper triangular.
- svd_decompose: Computes the Singular Value Decomposition of the matrix of the provided name.
- find_orthonormal_basis: Finds an orthonormal basis for the matrix of the provided name. The vectors returned are all pair-wise orthogonal and are of unit length.
- change_basis: Computes the matrix of the provided name in the new basis.

- vector_project: Projects a vector in the tensor store to the specified vector in the same vector space
- vector_dot_product: Computes the dot product of two vectors in the tensor stores based on their provided names.
- vector_cross_product: Computes the cross product of two vectors in the tensor stores based on their provided names.
- gradient: Computes the gradient of a multivariable function based on the input function. Example call:gradient("x^2 + 2xyz + zy^3"). Do NOT include the function name (like f(x, y, z) = ...).
-
curl: Computes the curl of a vector field based on the input vector field. The input string must be formatted as a python list. Example call:curl("
[3xy, 2z^4, 2y]"").
-
divergenceComputes the divergence of a vector field based on the input vector field. The input string must be formatted as a python list. Example call:divergence("[3xy, 2z^4, 2y]"").
-
laplacianComputes the laplacian of a scalar function (as the divergence of the gradient) or a vector field (where a component-wise laplacian is computed). If a scalar function is the input, it must be input in the same format as in thegradienttool. If the input is a vector field, it must be input in the same manner as thecurl/divergencetools.
-
directional_deriv: Computes the directional derivative of a function in a given directionuBy default, the tool normalizesubefore computing the directional derivative, as specified by theunitparameter.

- plot_vector_field: Plots a vector field (specified in the same format as in the curl/divergence functions). Currently, only 3d vector fields are supported. A 2d png perspective image of the vector field is returned. By default, the bounds of the graph are from -1 to 1 on each axis.
-
plot_function: Plots a function in 2d or 3d (based on the input variables), specified in the same format as in thegradient`tool. Only the variables x and y can be used.

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