ChEMBL-MCP-Server
Description
# ChEMBL-MCP-Server A FastMCP wrapper server based on the chembl_webresource_client package, providing API access to the ChEMBL database. ## Features - Complete API access to the ChEMBL database - Asynchronous API calls implemented using FastMCP framework - Built-in error…
About
# ChEMBL-MCP-Server A FastMCP wrapper server based on the chembl_webresource_client package, providing API access to the ChEMBL database. ## Features - Complete API access to the ChEMBL database - Asynchronous API calls implemented using FastMCP framework - Built-in error handling and timeout mechanisms - Support for…
Details
- Author
- BioMCP-Hub
- Downloads
- 325
- Categories
- Other, API, Database
Jump to
- Complete API access to the ChEMBL database
- Asynchronous API calls implemented using FastMCP framework
- Built-in error handling and timeout mechanisms
- Support for both HTTP and stdio transport methods
- Complete type annotations and docstrings
- Data entity APIs (activity, assay, target, molecule, drug, and more)
- Chemical tool APIs (SMILES canonicalization, conversion, structural alerts)
Setting up with Highlight
This MCP is not yet compatible with Highlight’s one-click setup. However, you can still use it with Highlight by following these steps:
- Download and install Highlight from highlightai.com/download
- Navigate to the plugins tab and select "Add Custom Plugin"
-
Configure the plugin with the settings below
Plugin Name
ChEMBL-MCP-ServerCommand (node, npx, python, etc.)Please refer to the README for specific instructions on how to obtain API keys or other required environment variables.
- Enable "Start Automatically" if you want the plugin to start when Highlight launches
From the repository
Clone the repository, install dependencies with pip install -r requirements.txt, then start the server using python chembl_searver.py. Configure it via command-line parameters such as --host, --port, --transport (http or stdio), and --log-level.
Claude Desktop / Cursor
Paste into your MCP client config file to install this server.
{
"mcpServers": {
"chembl-mcp-server": {
"chembl-mcp-server-biomcp-hub": {
"command": "python",
"args": [
"chembl_searver.py"
]
}
}
}
}McpServers
{
"chembl-mcp-server-biomcp-hub": {
"command": "python",
"args": [
"chembl_searver.py"
]
}
}ChEMBL-MCP-Server
A FastMCP wrapper server based on the chembl_webresource_client package, providing API access to the ChEMBL database.
Features
- Complete API access to the ChEMBL database
- Asynchronous API calls implemented using FastMCP framework
- Built-in error handling and timeout mechanisms
- Support for both HTTP and stdio transport methods
- Complete type annotations and docstrings
Installation
```bash
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